Introduction

Shixiong Zhang (his academic family tree) received his Ph.D. Degree in Department of Computer Science at City University of Hong Kong in 2020 under the supervision of Dr. Ka-Chun Wong.

Experiences

Associate Professor

2020 - Present
Xidian University, Xi'an, China

Research Trainee

2019 - 2020
Wilmer Eye Institute, Johns Hopkins School of Medicine, MD, USA

Advised by Prof. Jiang QIAN (Ph.D. Max Planck Institute)

Fundings

National Natural Science Foundation of China (NSFC Youth Fund) - 2021

Publications

  • Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing
  • Zhuohan Yu, Chuang Bian, Genggeng Liu, Shixiong Zhang, Ka-Chun Wong, Xiangtao Li*
    Briefings in Bioinformatics (2021)
  • Feature Selection and Feature Extraction: Highlights
  • Hiu-Man Wong, Xingjian Chen, Hiu-Hin Tam, Jiecong Lin, Shixiong Zhang, Shankai Yan, Xiangtao Li, Ka-Chun Wong*
    ISMSI (2021)
  • Deep embedded clustering with multiple objectives on scRNA-seq data
  • Xiangtao Li, Shixiong Zhang, Ka-Chun Wong*
    Briefings in Bioinformatics (2021)
  • Uncovering the Key Dimensions of High-Throughput Biomolecular Data using Deep Learning
  • Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Jiecong Lin, Ka-Chun Wong*
    Nucleic Acids Research, (2020) IF 2018 = 11.147
  • Identification of Pan-cancer Ras Pathway Activation with Deep Learning
  • Xiangtao Li, Shixiong Zhang, Ka-Chun Wong
    Briefings in Bioinformatics (2020)
  • CRISPR-Net: A Recurrent Convolutional Network quantifies CRISPR Off-target Activities with Mismatches and Indels
  • Jiecong Lin, Zhaolei Zhang, Shixiong Zhang, Junyi Chen, Ka-Chun Wong*
    Advanced Sciences (2020)
  • Nature-Inspired Compressed Sensing for Transcriptomic Profiling from Random Composite Measurement
  • Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong*
    IEEE Transactions on Cybernetics (2019) IF 2018 = 10.387
  • Synergizing CRISPR/Cas9 Off-target Predictions for Ensemble Insights and Practical Applications
  • Shixiong Zhang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong*
    Bioinformatics 35 (7), 1108-1115. (2019) IF 2017 = 5.481
  • Review of Single-cell RNA-seq Data Clustering for Cell Type Identification and Characterization
  • Shixiong Zhang, Xiangtao Li, Jiecong Lin, Qiuzhen Lin, Ka-Chun Wong*
    arXiv (2019)
  • Multiobjective Genome-Wide RNA-Binding Event Identification from CLIP-seq Data
  • Xiangtao Li, Shixiong Zhang, Ka-Chun Wong*
    IEEE Transactions on Cybernetics (2019)
  • Single-cell RNA-seq Interpretations using Evolutionary Multiobjective Ensemble Pruning
  • Xiangtao Li, Shixiong Zhang, Ka-Chun Wong*
    Bioinformatics (2019)
  • Evolving Transcriptomic Profiles from Single-cell RNA-seq Data using Nature-Inspired Multiobjective Optimization
  • Xiangtao Li, Shixiong Zhang, Ka-Chun Wong*
    IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019)
  • Early Cancer Detection from Multianalyte Blood Test Results
  • Ka-Chun Wong*, Junyi Chen, Jiao Zhang, Jiecong Lin, Shankai Yan, Shixiong Zhang, Xiangtao Li, Cheng Liang, Chengbing Peng, Sam Kwong
    iScience (2018)
  • Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies
  • Xiangtao Li, Shixiong Zhang, Ka-Chun Wong*
    IEEE/ACM Transactions on Computational Biology and Bioinformatics (2018)
  • Two-factor High-order Fuzzy-trend FTS Model based on BSO-FCM and Improved KA for TAIEX Stock Forecasting
  • Wenyu Zhang, Shixiong Zhang, Shuai Zhang*
    Nonlinear Dynamics (2018)
  • A Novel Method Based on FTS with Both GA-FCM and Multifactor BPNN for Stock Forecasting
  • Wenyu Zhang, Shixiong Zhang, Shuai Zhang*, Dejiang Yu, Ningning Huang
    Soft Computing (2018)
  • A Multi-factor and High-order Stock Forecast Model Based on Type-2 FTS Using Cuckoo Search and Self-adaptive Harmony Search
  • Wenyu Zhang*, Shixiong Zhang, Shuai Zhang, Dejiang Yu, Ningning Huang
    Neurocomputing (2017)

    Scholarships and Awards

    Outstanding Academic Performance Award - City University of Hong Kong, 2020, 2019, 2018
    Research Tuition Scholarship - City University of Hong Kong, 2019, 2018
    Postgraduate Studentship - Ph.D. Funding from HK Government 2017-2020
    Excellent Master Thesis of Zhejiang Province - Zhejiang Province, China, 2017
    National Scholarship - Ministry of Education, China, 2016

    review services

    Journals

    _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

    Conferences